miRBase entry: gga-mir-124c

Stem-loop gga-mir-124c


Accession
MI0022364
Description
Gallus gallus gga-mir-124c precursor miRNA
Gene family
MIPF0000021; mir-124

Literature search
12 open access papers mention gga-mir-124c
(36 sentences)

Sequence

129764 reads, 5 reads per million, 5 experiments
ugccgccuggaggauccgcucuuggCAUUCACCGCGUGCCUUAAUUguaugacauuaaaUCAAGGUCCGCUGUGAACACGGagaggcagagccugggagcg
...(((((..(((.((.((((((.(..(((((.(((.(((((.(((...........))).))))).))).)))))..).)))).)).)).))).)).)))

Structure
ugc   -  gg   a  c  -    g CA     C   U     A   guau 
   cgc cu  agg uc gc ucuu g  UUCAC GCG GCCUU AUU    g
   ||| ||  ||| || || |||| |  ||||| ||| ||||| |||    a
   gcg gg  ucc ag cg agaG C  AAGUG CGC UGGAA Uaa    c
---   a  -g   g  a  g    G AC     U   C     C   auua 


Annotation confidence Not enough data
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Genome context
chr2: 114701957-114702057 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from gga-mir-124c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-124c-5p

Accession MIMAT0025599
Description Gallus gallus gga-miR-124c-5p mature miRNA
Sequence 26 - CAUUCACCGCGUGCCUUAAUU - 46
Evidence experimental
Illumina [1]

Mature gga-miR-124c-3p

Accession MIMAT0025600
Description Gallus gallus gga-miR-124c-3p mature miRNA
Sequence 60 - UCAAGGUCCGCUGUGAACACGG - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227