miRBase entry: gga-mir-6550

Stem-loop gga-mir-6550


Accession
MI0022367
Description
Gallus gallus gga-mir-6550 precursor miRNA


Sequence

57 reads, 1 reads per million, 5 experiments
gcuugcagguaggagcuucAAAGCAGCCCAGGAAGCGCUgcugcaaaacgugGCUCCACCCUCGGCUGCUUUGAaguucccacuuccagcacuucuuccu
(((.(.((((.(((((((((((((((((.(((..(.(((((........))))).)...))).))))))))))))))))).))))).)))..........

Structure
----------   u c    a                 C   -AA C     ugc 
          gcu g aggu ggagcuucAAAGCAGCC AGG   G GCUgc   a
          ||| | |||| ||||||||||||||||| |||   | |||||    
          cga c uuca ccuugaAGUUUCGUCGG UCC   C CGgug   a
uccuucuuca   c -    c                 C   CAC U     caa 


Annotation confidence Not enough data
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Genome context
chr10: 19176435-19176534 [+]

Database links

Mature gga-miR-6550-5p

Accession MIMAT0025605
Description Gallus gallus gga-miR-6550-5p mature miRNA
Sequence 20 - AAAGCAGCCCAGGAAGCGCU - 39
Evidence experimental
Illumina [1]

Mature gga-miR-6550-3p

Accession MIMAT0025606
Description Gallus gallus gga-miR-6550-3p mature miRNA
Sequence 53 - GCUCCACCCUCGGCUGCUUUGA - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227