Stem-loop gga-mir-6553

Accession

MI0022371

Description

Gallus gallus gga-mir-6553 precursor miRNA

Sequence

15 reads, 1 reads per million, 4 experiments

ucugaggcuggcggagcgugccaggAGCAGCCCUGUGAUAGCUGUUUGCugcuaaccugcAACACUACCCUGAGCUGCUCCuggcuccaucccacgucaa
..(((.(.(((.((.(.(.((((((((((((.(.(.(.(((.((((.((.........))))))))).)).).)))))))))))).)).)))))).))).

Structure

uc   g c   c  a c u            C U U A   C    U  ugc 
  uga g ugg gg g g gccaggAGCAGC C G G UAG UGUU GC   u
  ||| | ||| || | | |||||||||||| | | | ||| |||| ||   a
  acu c acc cu c c cgguCCUCGUCG G C C AUC ACAA cg   a
-a   g -   -  a - u            A U - C   -    -  ucc 

Annotation confidence Not enough data

Genome context

Unknown

Mature gga-miR-6553-5p

• Accession: MIMAT0025613
• Description: Gallus gallus gga-miR-6553-5p mature miRNA
• Sequence: 26 - AGCAGCCCUGUGAUAGCUGUUUGC - 49
• Evidence: experimental ; Illumina [1]

Mature gga-miR-6553-3p

• Accession: MIMAT0025614
• Description: Gallus gallus gga-miR-6553-3p mature miRNA
• Sequence: 61 - AACACUACCCUGAGCUGCUCC - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227