miRBase entry: gga-mir-6573

Stem-loop gga-mir-6573


Accession
MI0022391
Description
Gallus gallus gga-mir-6573 precursor miRNA


Sequence

12 reads, 1 reads per million, 3 experiments
cugugcugugugggacuguUGGAGAAGUGAGGGGCUCUCUGugccguggaaaugcggugagcucuccaucGGAGGCACUCUGACUUCUCGGAcagggcugcacuggugguuaaugcuuu
....(((((((((..(((((.(((((((.((((((.(((((....(((((...((.....))..)))))))))))).)))).))))))).)))))..)))))).)))............

Structure
--------cugu   -      ga     G       G    -  U     ugcc     aau  g 
            gcu gugugg  cuguU GAGAAGU AGGG GC CUCUG    gugga   gc g
            ||| ||||||  ||||| ||||||| |||| || |||||    |||||   || u
            ugg cacguc  gacAG CUCUUCA UCUC CG GAGGc    uaccu   cg g
uuucguaauugg   u      gg     G       G    A  -     ----     -cu  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr27: 1690903-1691021 [+]

Database links

Mature gga-miR-6573-5p

Accession MIMAT0025653
Description Gallus gallus gga-miR-6573-5p mature miRNA
Sequence 20 - UGGAGAAGUGAGGGGCUCUCUG - 41
Evidence experimental
Illumina [1]

Mature gga-miR-6573-3p

Accession MIMAT0025654
Description Gallus gallus gga-miR-6573-3p mature miRNA
Sequence 71 - GGAGGCACUCUGACUUCUCGGA - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227