miRBase entry: gga-mir-6628

Stem-loop gga-mir-6628


Accession
MI0022447
Description
Gallus gallus gga-mir-6628 precursor miRNA


Sequence

ucccuccuguaucuacguaaugguuugggcaaagccuggguccgacuuugugcuauggggaagacagagCAGAAGUCGUGGCCUGGCACAugccuagcaccaggcaauuc
................((..(((((((((((..(((.((((((((((((.((((.((.......)).))))))))))).))))))))...))))))).)))).)).....

Structure
ucccuccuguaucuac  aa    -       -aa   u     -       g    a  gg 
                gu  uggu uugggca   gcc ggguc cgacuuu ugcu ug  g
                ||  |||| |||||||   ||| ||||| ||||||| |||| ||  a
                cg  acca gauccgu   CGG UCCGG GCUGAAG ACga ac  a
-----------cuuaa  -g    c       ACA   -     U       -    g  ag 


Annotation confidence Not enough data
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Genome context
chr2: 12131149-12131258 [-]

Database links

Mature gga-miR-6628-3p

Accession MIMAT0025724
Description Gallus gallus gga-miR-6628-3p mature miRNA
Sequence 70 - CAGAAGUCGUGGCCUGGCACA - 90
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227