miRBase entry: gga-mir-6641

Stem-loop gga-mir-6641


Accession
MI0022460
Description
Gallus gallus gga-mir-6641 precursor miRNA


Sequence

aaaaaugauuuccuuacagACAGCUUUUUUAUUUCCAGUUAauguguuuuaaauacCUGCUGGGAGAAAAAAGCUAUgugcaaggugacagaaaacaagaggca
.....((.((.((((.((.(.(((((((((.((((((((....(((((...)))))..))))))))))))))))).).)).)))).))))..............

Structure
---------aaaaa  a  u    a  g C         A        UAau     u 
              ug uu ccuu ca A AGCUUUUUU UUUCCAGU    guguu  
              || || |||| || | ||||||||| ||||||||    ||||| u
              ac ag ggaa gu U UCGAAAAAA GAGGGUCG    cauaa  
acggagaacaaaag  -  u    c  g A         -        --UC     a 


Annotation confidence Not enough data
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Genome context
chr1: 179212021-179212124 [+]

Database links

Mature gga-miR-6641-5p

Accession MIMAT0025737
Description Gallus gallus gga-miR-6641-5p mature miRNA
Sequence 20 - ACAGCUUUUUUAUUUCCAGUUA - 41
Evidence experimental
Illumina [1]

Mature gga-miR-6641-3p

Accession MIMAT0025738
Description Gallus gallus gga-miR-6641-3p mature miRNA
Sequence 57 - CUGCUGGGAGAAAAAAGCUAU - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227