miRBase entry: gga-mir-6646-1

Stem-loop gga-mir-6646-1


Accession
MI0022464
Description
Gallus gallus gga-mir-6646-1 precursor miRNA
Gene family
MIPF0001490; mir-6646


Sequence

ugcagcccgcagcucagauucugccuuucucccagcugcugccaucaggacguugccagguUCUGGUGGUAGCAGCUGGAAGGaugcaggaagaucccaacaagggcugu
.(((((((........((((((((..((((.((((((((((((((((((((........)))))))))))))))))))).)))).))))...)))).......)))))))

Structure
u       gcagcuca    ---    cu    c                    guu 
 gcagccc        gauu   cugc  uucu ccagcugcugccaucaggac   g
 |||||||        ||||   ||||  |||| ||||||||||||||||||||    
 ugucggg        cuag   gacg  aGGA GGUCGACGAUGGUGGUCUug   c
-       -aacaacc    aag    -u    A                    gac 


Annotation confidence Not enough data
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Genome context
chr25: 2411755-2411864 [+]

Database links

Mature gga-miR-6646-3p

Accession MIMAT0025743
Description Gallus gallus gga-miR-6646-3p mature miRNA
Sequence 62 - UCUGGUGGUAGCAGCUGGAAGG - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227