miRBase entry: gga-mir-6675

Stem-loop gga-mir-6675


Accession
MI0022495
Description
Gallus gallus gga-mir-6675 precursor miRNA


Sequence

17 reads, 1 reads per million, 3 experiments
uuuggggccuccugccaccAUACGUGAGGUUCAUUGGGUUCcauagagcugcauggguuacaUCUCUGGACGUCACGUGUGAGGgcagaugcucagugcacagaagagu
....((((.((.((((..(((((((((.(((((..(((((((((........)))))..)).))..))))).)))))))))..)))))).))))...............

Structure
-----------uuug    c  c    ac         G     UU  -  --     aga 
               gggc uc ugcc  cAUACGUGA GUUCA  GG GU  UCcau   g
               |||| || ||||  ||||||||| |||||  || ||  |||||    
               cucg ag acgG  GUGUGCACU CAGGU  CU ca  gggua   c
ugagaagacacguga    u  -    GA         G     CU  a  uu     cgu 


Annotation confidence Not enough data
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Genome context
chr24: 3341724-3341832 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from gga-mir-6675
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-6675-5p

Accession MIMAT0025777
Description Gallus gallus gga-miR-6675-5p mature miRNA
Sequence 20 - AUACGUGAGGUUCAUUGGGUUC - 41
Evidence experimental
Illumina [1]

Mature gga-miR-6675-3p

Accession MIMAT0025778
Description Gallus gallus gga-miR-6675-3p mature miRNA
Sequence 63 - UCUCUGGACGUCACGUGUGAGG - 84
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227