miRBase entry: gga-mir-6680

Stem-loop gga-mir-6680


Accession
MI0022500
Description
Gallus gallus gga-mir-6680 precursor miRNA


Sequence

2 reads, 2 reads per million, 1 experiments
ccaagguauguaugguauguaucauugguguacuuggugagggugggcccugcccucauugagGUUGCUGAUGAAGAUACUGAAUgaacuuggacccagcacugccagca
(((((...(((.((((((.(.(((((((((..((((((((((((((...))))))))))))))..)))))))))).)))))).)))..))))).....((.......)).

Structure
-----------------     gua   a      g a         ua              g 
                 ccaag   ugu ugguau u ucauuggug  cuuggugagggugg  
                 |||||   ||| |||||| | |||||||||  |||||||||||||| c
                 gguuc   gUA GUCAUA A AGUAGUCGU  gaguuacucccguc  
acgaccgucacgaccca     -aa   A      G -         UG              c 


Annotation confidence Not enough data
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Genome context
chr21: 2632687-2632796 [+]

Database links

Mature gga-miR-6680-3p

Accession MIMAT0025784
Description Gallus gallus gga-miR-6680-3p mature miRNA
Sequence 64 - GUUGCUGAUGAAGAUACUGAAU - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227