Stem-loop gga-mir-1684b

Accession

MI0022501

Description

Gallus gallus gga-mir-1684b precursor miRNA

Gene family

MIPF0001537; mir-1684

Literature search

1 open access papers mention gga-mir-1684b
(1 sentences)

Sequence

25 reads, 1 reads per million, 3 experiments

gcugccaaauggaucggguuugaaaggagagcucugcuuccucauacauacucaucuuuucuauggauAAGUAUGAGGAAAUGGAGAUCUccuuccauuccaccuguuuu
......((((((....((..((.(((((((.(((((.((((((((((.((.((((.......)))).)).)))))))))).))))).))))))).))..))..)))))).

Structure

gcugcc      aucg  uu  a       g     c          a  c    cu 
      aaaugg    gg  ug aaggaga cucug uuccucauac ua ucau  u
      ||||||    ||  || ||||||| ||||| |||||||||| || ||||  u
      uuuguc    cc  ac uuccUCU GAGGU AAGGAGUAUG Au ggua  u
-----u      --ca  uu  c       A     A          A  a    uc 

Annotation confidence Not enough data

Genome context

chr4: 89658911-89659020 [-]

Mature gga-miR-1684b-3p

• Accession: MIMAT0025785
• Description: Gallus gallus gga-miR-1684b-3p mature miRNA
• Sequence: 69 - AAGUAUGAGGAAAUGGAGAUCU - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22418847
   Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
   "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
   "RNA Biol (2012) 9:212-227