Stem-loop sequence gga-mir-1684b

Accession

MI0022501 (change log)

Description

Gallus gallus miR-1684b stem-loop

Gene family

MIPF0001537; mir-1684

Literature search

1 open access papers mention gga-mir-1684b
(1 sentences)

Stem-loop

   gcugccaaauggau     ---u  a       g    gc          a  cu   cu 
5'               cgggu    ug aaggaga cucu  uuccucauac ua  cau  u
                 |||||    || ||||||| ||||  |||||||||| ||  |||  u
3'               gucca    ac uuccucu gagg  aaggaguaug au  gua  u
   ----------uuuu     ccuu  c       a    ua          a  ag   uc 

Deep sequencing

3248 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr4: 89658911-89659020 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0022501

Mature sequence gga-miR-1684b-3p

• Accession: MIMAT0025785
• Sequence: 69 - aaguaugaggaaauggagaucu - 90
• Deep sequencing: 3246 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000075D429_9031
• Predicted targets:
  • TargetScanVert:gga-miR-1684b-3p
  • miRDB:gga-miR-1684b-3p

References

1. PMID:22418847 "Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation" Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH RNA Biol. 9:212-227(2012).