miRBase entry: gga-mir-6516

Stem-loop gga-mir-6516


Accession
MI0022520
Description
Gallus gallus gga-mir-6516 precursor miRNA
Gene family
MIPF0001672; mir-6516

Literature search
1 open access papers mention gga-mir-6516
(1 sentences)

Sequence

106 reads, 3 reads per million, 5 experiments
agaggucccccugcuggguuccuccuAUGCAGUAACAGGUGUGAGCAUccaugcagcauucugaugguCAUGUAUGAUACUGCACACAACGaguugcugucuucagccaa
.((((..(((.....)))..))))...(((((((.((..(((((.((((.(((...)))...)))).)))))..)).)))))))...........((((....))))...

Structure
agaggucccccugcuggguuccuccuA       A  GG     G    --c   c 
                           UGCAGUA CA  UGUGA CAUc   aug  
                           ||||||| ||  ||||| ||||   ||| a
                           ACGUCAU GU  GUACu guag   uac  
-aaccgacuucugucguugaGCAACAC       A  AU     g    ucu   g 


Annotation confidence High
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Genome context
chr18: 4170788-4170897 [-]

Database links

Mature gga-miR-6516-5p

Accession MIMAT0025806
Description Gallus gallus gga-miR-6516-5p mature miRNA
Sequence 27 - AUGCAGUAACAGGUGUGAGCAU - 48
Evidence experimental
Illumina [1]
Database links
Predicted targets

Mature gga-miR-6516-3p

Accession MIMAT0025807
Description Gallus gallus gga-miR-6516-3p mature miRNA
Sequence 69 - CAUGUAUGAUACUGCACACAACG - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227