miRBase entry: gga-mir-6702

Stem-loop gga-mir-6702


Accession
MI0022524
Description
Gallus gallus gga-mir-6702 precursor miRNA


Sequence

38 reads, 27 reads per million, 1 experiments
cuaugauucuacguggccuCACCAGGGCAGAGUAGAGGUGUGuaguagagcucaccucccucaaccugcuggccacgcuccuuuuaaugccccccaggaucccauuggcc
...........(((((((....((((...(((..((((((.((......)).)))))).)))..))))..)))))))...........(((.....((...))...))).

Structure
----------------------cuaugauucua       uCAC    GCA   UA      U  ag 
                                 cguggcc    CAGG   GAG  GAGGUG Gu  u
                                 |||||||    ||||   |||  |||||| ||   
                                 gcaccgg    gucc   cuc  cuccac cg  a
ccgguuacccuaggaccccccguaauuuuccuc       --uc    -aa   -c      u  ag 


Annotation confidence Not enough data
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Genome context
chr3: 107838931-107839040 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-6702
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-6702-5p

Accession MIMAT0025812
Description Gallus gallus gga-miR-6702-5p mature miRNA
Sequence 20 - CACCAGGGCAGAGUAGAGGUGUG - 42
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227