miRBase entry: gga-mir-6709

Stem-loop gga-mir-6709


Accession
MI0022531
Description
Gallus gallus gga-mir-6709 precursor miRNA


Sequence

4 reads, 1 reads per million, 3 experiments
cugagcgguuccucugaccagaggcAGCCCGGCUGCUAACAAUGAGGAGAuggcguguuguuuucccucgugguucugcagggcugcuuuugcgauccgcgcucagcuca
((((((((((.....))))(((((((((((.((....(((.((((((.((.(((.....))).)))))))).)))..)).)))))))))))(((...)))))))))....

Structure
----      gguuccucugacc           G  UGCU   A      A  u   g 
    cugagc             agaggcAGCCC GC    AAC AUGAGG GA ggc u
    ||||||             ||||||||||| ||    ||| |||||| || ||| g
    gacucg             uuuucgucggg cg    uug ugcucc cu uug u
acuc      ----cgccuagcg           a  --uc   g      -  u   u 


Annotation confidence Not enough data
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Genome context
chr11: 615293-615402 [-]

Database links

Mature gga-miR-6709-5p

Accession MIMAT0025819
Description Gallus gallus gga-miR-6709-5p mature miRNA
Sequence 26 - AGCCCGGCUGCUAACAAUGAGGAGA - 50
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227