Stem-loop sequence gga-mir-458b

Accession

MI0022541 (change log)

Description

Gallus gallus miR-458b stem-loop

Gene family

MIPF0000179; mir-458

Literature search

3 open access papers mention gga-mir-458b
(3 sentences)

Stem-loop

   --au     uuuuc   uacau       ua     caa          -  au 
5'     gcugu     cag     auggcag  ccauu   agagcuauga ca  g
       |||||     |||     |||||||  |||||   |||||||||| ||  a
3'     cggca     guc     uaccguc  gguaa   ucucgauauu gu  c
   gcgc     -ccac   -----       gc     aag          u  cg 

Deep sequencing

135 reads, 0 reads per million, 4 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr13: 8233317-8233418 [+]
• Overlapping transcripts:

  antisense

  ENSGALT00000035326 ; gga-mir-458a-201; exon 1

Clustered miRNAs

< 10kb from gga-mir-458b

• gga-mir-458a: chr13: 8233311-8233426 [-]
• gga-mir-458b: chr13: 8233317-8233418 [+]

Database links

• miRBase Tracker:MI0022541

Mature sequence gga-miR-458b-5p

• Accession: MIMAT0025830
• Sequence: 26 - aguaccauucaaagagcuauga - 47
• Deep sequencing: 34 reads, 3 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-458b-5p
  • miRDB:gga-miR-458b-5p

Mature sequence gga-miR-458b-3p

• Accession: MIMAT0025831
• Sequence: 62 - auagcucugaaaauggcgcug - 82
• Deep sequencing: 101 reads, 4 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-458b-3p
  • miRDB:gga-miR-458b-3p

References

1. PMID:22418847 "Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation" Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH RNA Biol. 9:212-227(2012).