miRBase entry: gga-mir-6599

Stem-loop gga-mir-6599


Accession
MI0022544
Description
Gallus gallus gga-mir-6599 precursor miRNA

Literature search
1 open access papers mention gga-mir-6599
(1 sentences)

Sequence

12 reads, 0 reads per million, 2 experiments
cagaggcggugcugggagcgAAGGGAGGCUCCGGUCCGCUCUGAgggcacacgaugUGACGGAUCCUGGCUCCCUCCGcuccucccggcgcacaccu
...(((.(((((((((((((.((((((.(...(((((((.(...(......)...).).))))))..).)))))).)))...))))))))).).)))

Structure
cag   c -         ---   A      G UCC      - U UGA gg 
   agg g gugcuggga   gcg AGGGAG C   GGUCCG C C   g  c
   ||| | |||||||||   ||| |||||| |   |||||| | |   |   
   ucc c cgcggcccu   cGC UCCCUC G   CUAGGC G g   c  a
---   a a         ccu   C      G -UC      A U uag ac 


Annotation confidence Not enough data
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Genome context
chr18: 5100494-5100590 [-]

Database links

Mature gga-miR-6599-5p

Accession MIMAT0025836
Description Gallus gallus gga-miR-6599-5p mature miRNA
Sequence 21 - AAGGGAGGCUCCGGUCCGCUCUGA - 44
Evidence experimental
Illumina [1]

Mature gga-miR-6599-3p

Accession MIMAT0025837
Description Gallus gallus gga-miR-6599-3p mature miRNA
Sequence 57 - UGACGGAUCCUGGCUCCCUCCG - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22418847
    Drastic expression change of transposon-derived piRNA-like RNAs and microRNAs in early stages of chicken embryos implies a role in gastrulation
    "Shao P, Liao JY, Guan DG, Yang JH, Zheng LL, Jing Q, Zhou H, Qu LH"
    "RNA Biol (2012) 9:212-227