Stem-loop ghr-MIR169a

Accession

MI0022546

Description

Gossypium hirsutum ghr-MIR169a precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

12 open access papers mention ghr-MIR169a
(34 sentences)

Sequence

agauaaagagucuuguuuggUAGCCAAGGAUGACUUGCCUGcaccuaauguccacgagguuuuaauacaucaaaaacccugguugggucccaggcagucaccuuggcuaacuagacaggcuguuuucau
.((.(((.(((((.(((((((((((((((.(((((.(((((.((((((...(((.(.((((((.........))))))))))))))))..)))))))))))))))))).)))))))))))).)))))..

Structure

-a  u   g     u       -        A     U     -c      ugu   c a      aau 
  ga aaa agucu guuuggU AGCCAAGG UGACU GCCUG  accuaa   cca g gguuuu   a
  || ||| ||||| ||||||| |||||||| ||||| |||||  ||||||   ||| | ||||||   c
  cu uuu ucgga cagauca ucgguucc acuga cggac  uggguu   ggu c ccaaaa   a
ua  -   g     -       a        -     -     cc      ---   - -      acu 

Annotation confidence Not enough data

Genome context

Unknown

Mature ghr-miR169a

• Accession: MIMAT0025839
• Description: Gossypium hirsutum ghr-miR169a mature miRNA
• Sequence: 21 - UAGCCAAGGAUGACUUGCCUG - 41
• Evidence: experimental ; microarray [1]

References

1. PubMed ID: 22160515
   Difference in miRNA expression profiles between two cotton cultivars with distinct salt sensitivity
   "Yin Z, Li Y, Yu J, Liu Y, Li C, Han X, Shen F"
   "Mol Biol Rep (2012) 39:4961-4970