miRBase entry: blv-mir-B2

Stem-loop blv-mir-B2


Accession
MI0022562
Description
Bovine leukemia virus blv-mir-B2 precursor miRNA


Sequence

AUGACUGAGUGUAGCGCAGAGAgauugucgcuucUGCGUGUCGCUCAGUCAUUUU
(((((((((((..((((((((.((...))..))))))))..)))))))))))...

Structure
---           UA        -A  u 
   AUGACUGAGUG  GCGCAGAG  ga  
   |||||||||||  ||||||||  || u
   UACUGACUCGC  UGCGUcuu  cu  
UUU           UG        cg  g 


Annotation confidence Not enough data
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Genome context
K02120.1: 6504-6558 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from blv-mir-B2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature blv-miR-B2-5p

Accession MIMAT0025860
Description Bovine leukemia virus blv-miR-B2-5p mature miRNA
Sequence 1 - AUGACUGAGUGUAGCGCAGAGA - 22
Evidence experimental
SOLiD [1], Illumina [2]

Mature blv-miR-B2-3p

Accession MIMAT0025861
Description Bovine leukemia virus blv-miR-B2-3p mature miRNA
Sequence 35 - UGCGUGUCGCUCAGUCAUUUU - 55
Evidence experimental
SOLiD [1], Illumina [2]

References

  1. PubMed ID: 22308400
    RNA virus microRNA that mimics a B-cell oncomiR
    "Kincaid RP, Burke JM, Sullivan CS"
    "Proc Natl Acad Sci U S A (2012) 109:3077-3082

  2. PubMed ID: 23345446
    Deep sequencing reveals abundant noncanonical retroviral microRNAs in B-cell leukemia/lymphoma
    "Rosewick N, Momont M, Durkin K, Takeda H, Caiment F, Cleuter Y, Vernin C, Mortreux F, Wattel E, Burny A, Georges M, Van den Broeke A"
    "Proc Natl Acad Sci U S A (2013) 110:2306-2311