Stem-loop cln-MIR166

Accession

MI0022568

Description

Cunninghamia lanceolata cln-MIR166 precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

1 open access papers mention cln-MIR166
(1 sentences)

Sequence

uccaaucgaauCCGGACCAGGCUUCAUCCCAGgcaucuggacccaaucgacagcaguuccuguagccuuuaaaaggaacucugccaaggucuccucugcaauagacaggaguccagcggggcuagcaucccugaggggaugcugagguguuggguuguguuggu
.(((((..((((((((((.(((.((.(((((((.((((((.(((......(((.(((((((............))))))))))....((.((((((((...))))..)))).))....))))))).)).)))).))))).)))..))).)))))))..))))).

Structure

u     cg       -   -A   U  A   -    c  -    a   -----------------------------aaucga   c       guagc 
 ccaau  aauCCGG ACC  GGC UC UCC CAGg au cugg ccc                                   cag aguuccu     c
 |||||  ||||||| |||  ||| || ||| |||| || |||| |||                                   ||| |||||||      
 gguug  uuggguu ugg  ucg ag ggg gucc ua gauc ggg                                   guc ucaagga     u
u     ug       g   ag   u  -   a    c  c    -   gcgaccugaggacagauaacgucuccucuggaacc   -       aaauu 

Annotation confidence Not enough data

Genome context

Unknown

Mature cln-miR166

• Accession: MIMAT0027350
• Description: Cunninghamia lanceolata cln-miR166 mature miRNA
• Sequence: 12 - CCGGACCAGGCUUCAUCCCAG - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22894611
   Identification and characterization of small non-coding RNAs from Chinese fir by high throughput sequencing
   Wan LC, Wang F, Guo X, Lu S, Qiu Z, Zhao Y, Zhang H, Lin J
   BMC Plant Biol (2012) 12:146