miRBase entry: mmu-mir-6971

Stem-loop mmu-mir-6971


Accession
MI0022819
Symbol
MGI: Mir6971
Description
Mus musculus mmu-mir-6971 precursor miRNA

Literature search
2 open access papers mention mmu-mir-6971
(2 sentences)

Sequence

40 reads, 8 reads per million, 21 experiments
uggggUGGGGGAGGGUGUAGAGGCUgggcuggcagacucaucACAGCCUCUGCUUCUUCUCAG
........(((((((.((((((((((((.(((.....))))).)))))))))).)))))))..

Structure
uggggUGG       U          -  c   c 
        GGGAGGG GUAGAGGCUg gg ugg a
        ||||||| |||||||||| || ||| g
        CUCUUCU CGUCUCCGAC cu acu a
------GA       U          A  -   c 


Annotation confidence Not enough data
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Genome context
chr17: 34841809-34841871 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mmu-mir-6971
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-6971-5p

Accession MIMAT0027844
Description Mus musculus mmu-miR-6971-5p mature miRNA
Sequence 6 - UGGGGGAGGGUGUAGAGGCU - 25
Evidence experimental
meta-analysis [1]

Mature mmu-miR-6971-3p

Accession MIMAT0027845
Description Mus musculus mmu-miR-6971-3p mature miRNA
Sequence 43 - ACAGCCUCUGCUUCUUCUCAG - 63
Evidence experimental
meta-analysis [1]

References

  1. PubMed ID: 22955976
    Discovery of hundreds of mirtrons in mouse and human small RNA data
    "Ladewig E, Okamura K, Flynt AS, Westholm JO, Lai EC"
    "Genome Res (2012) 22:1634-1645