miRBase entry: mdm-MIR159a

Stem-loop mdm-MIR159a


Accession
MI0023002
Description
Malus domestica mdm-MIR159a precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
11 open access papers mention mdm-MIR159a
(71 sentences)

Sequence

ggagcuccuuuugauucaaaagcaggagggagagaggguuuuacacugcugcugguucauggaugccccugaggugcgcacgauaaggaaacugcgcagcuuaaggguuugcauggcccaggagaugugaauuccuucuccucuccuuuCUUGGAUUGAAGGGAGCUCC
(((((((((((((((((((.((.(((((((.(((((((..((.(((..((.((((.(((((.(.((((.((((.((((((............)))))).)))).)))).).))))).)))).))..)))))..)))))))))))))))).)))))))))))))))))))

Structure
                   a  c       a       uu  a   ug  g    u     g u    c    g      cgaua 
ggagcuccuuuugauucaa ag aggaggg gagaggg  uu cac  cu cugg ucaug a gccc ugag ugcgca     a
||||||||||||||||||| || ||||||| |||||||  || |||  || |||| ||||| | |||| |||| ||||||      
CCUCGAGGGAAGUUAGGUU uu uccucuc cucuucc  aa gug  ga gacc gguac u uggg auuc acgcgu     g
                   C  -       -       uu  -   ua  g    c     g u    a    g      caaag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
MDC026449.10: 321-489 [-]

Database links

Mature mdm-miR159a

Accession MIMAT0025898
Description Malus domestica mdm-miR159a mature miRNA
Sequence 150 - CUUGGAUUGAAGGGAGCUCC - 169
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47