miRBase entry: mdm-MIR167b

Stem-loop mdm-MIR167b


Accession
MI0023027
Description
Malus domestica mdm-MIR167b precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
11 open access papers mention mdm-MIR167b
(199 sentences)

Sequence

gggaaaaagUGAAGCUGCCAGCAUGAUCUAgcuuuggcuaaagauguauauaaucacguauauauguaucaguucuauuaacccuggcuaggucaugcucugacagcuucacuccuuccu
(((((..(((((((((((.((((((((((((((..((.((((.((((((((......)))))))).)..........))).))..))))))))))))))..).))))))))))..)))))

Structure
     aa          - -C              uu  c   ---------- g        aa 
gggaa  agUGAAGCUG C  AGCAUGAUCUAgcu  gg uaa          a auguauau  u
|||||  |||||||||| |  ||||||||||||||  || |||          | ||||||||   
uccuu  ucacuucgac g  ucguacuggaucgg  cc auu          u uauauaug  c
     cc          a uc              uc  a   aucuugacua g        ca 


Annotation confidence Not enough data
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Genome context
MDC000702.551: 31958-32077 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mdm-MIR167b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdm-miR167b

Accession MIMAT0025923
Description Malus domestica mdm-miR167b mature miRNA
Sequence 10 - UGAAGCUGCCAGCAUGAUCUA - 30
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47