miRBase entry: mdm-MIR168a

Stem-loop mdm-MIR168a


Accession
MI0023036
Description
Malus domestica mdm-MIR168a precursor miRNA
Gene family
MIPF0000081; MIR168

Literature search
8 open access papers mention mdm-MIR168a
(16 sentences)

Sequence

gcggucucuaauUCGCUUGGUGCAGGUCGGGAAccgcuuugcccuacuuuaccgugucugggccuaugagcuagguggcucgauguguaaucggccacagggcaaaacaggucccgccuugcaucaacugaaucggagaccgc
(((((((((.(((((.((((((((((.(((((.((..((((((((............((((.........))))(((((.((((.....)))))))))))))))))...))))))).)))))))))).))))).)))))))))

Structure
         a     C          U     A  -gc        acuuuaccgugucugggccuaugagcuag     u    g 
gcggucucu auUCG UUGGUGCAGG CGGGA cc   uuugcccu                             guggc cgau u
||||||||| ||||| |||||||||| ||||| ||   ||||||||                             ||||| |||| g
cgccagagg uaagu aacuacguuc gcccu gg   aaacggga                             caccg gcua u
         c     c          c     -  aca        -----------------------------     -    a 


Annotation confidence Not enough data
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Genome context
MDC036375.12: 8051-8193 [+]

Database links

Mature mdm-miR168a

Accession MIMAT0025932
Description Malus domestica mdm-miR168a mature miRNA
Sequence 13 - UCGCUUGGUGCAGGUCGGGAA - 33
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47