miRBase entry: mdm-MIR168b

Stem-loop mdm-MIR168b


Accession
MI0023037
Description
Malus domestica mdm-MIR168b precursor miRNA
Gene family
MIPF0000081; MIR168

Literature search
5 open access papers mention mdm-MIR168b
(16 sentences)

Sequence

guaggaggcguagggcacgaugauucauuuccuggcggucucuaauUCGCUUGGUGCAGGUCGGGAAccgcuucgycccguuugagccuauaaaccagcuggcucgaggcugcggggcgaaacggrucccgccuugcaucaacugaaucggagaccgcggugaaggcgguuucauggaucuugcguuccugc
(((((((.(((((((..(.((((..(.((((.(.(((((((((.(((((.((((((((((.(((((.(((.((((.((((((((((((............)))))))....))))).)))).))).))))).)))))))))).))))).))))))))).).))))...)..)))).).))))))))))))))

Structure
       g       ca g    uu --a    c g         a     C          U     A   c    y     ----       uauaa 
guaggag cguaggg  c auga  c   uuuc u gcggucucu auUCG UUGGUGCAGG CGGGA ccg uucg cccgu    uugagcc     a
||||||| |||||||  | ||||  |   |||| | ||||||||| ||||| |||||||||| ||||| ||| |||| |||||    |||||||      
cguccuu gcguucu  g uacu  g   gaag g cgccagagg uaagu aacuacguuc gcccu ggc aagc gggcg    agcucgg     c
       -       -a g    uu gcg    u g         c     c          c     r   a    g     ucgg       ucgac 


Annotation confidence Not enough data
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Genome context
MDC019425.247: 3213-3404 [+]

Database links

Mature mdm-miR168b

Accession MIMAT0025933
Description Malus domestica mdm-miR168b mature miRNA
Sequence 47 - UCGCUUGGUGCAGGUCGGGAA - 67
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47