miRBase entry: mdm-MIR394b

Stem-loop mdm-MIR394b


Accession
MI0023083
Description
Malus domestica mdm-MIR394b precursor miRNA
Gene family
MIPF0000100; MIR394

Literature search
3 open access papers mention mdm-MIR394b
(13 sentences)

Sequence

gggucucguagcuagcucuguaaacguggaugaucacguggguuucgcaaagcguuucuuacagaguucuUUGGCAUUCUGUCCACCUCCucuuucuucgaucucuuucucccucucuugcuguguauguaugugguuuaauggauggaggugggcauacugccaacagaguucuguuggauucucuuuguaaaacccucgugaguguauauauguaucguuacgcaguacucgaucc
(((((..(((.((.((...(((((((((.....(((((.((((((.((((((.(..(((.((((((((((((((((...((((((((((((((......((((.(...........................).))))....))).)))))))))))...)))))).)))))))))).)))..).)))))).)))))).))))).......)))))....)))))))))))..)))))

Structure
     uc   g  a  ucu    ----     --gauga     u      c      c uu   u          -      UUC           -   uucuuc    u uuucucccucuc 
ggguc  gua cu gc   guaa    acgug       ucacg ggguuu gcaaag g  ucu acagaguucu UUGGCA   UGUCCACCUCC ucu      gauc c            u
|||||  ||| || ||   ||||    |||||       ||||| |||||| |||||| |  ||| |||||||||| ||||||   ||||||||||| |||      |||| |            u
ccuag  cau ga cg   cauu    uguau       agugc cccaaa uguuuc c  agg ugucuugaga aaccgu   acggguggagg agg      uugg g            g
     cu   -  -  ---    gcua     auaugug     u      a      u uu   u          c      cau           u   --uaau    u uauguauguguc 


Annotation confidence Not enough data
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Genome context
MDC005660.433: 19401-19638 [-]

Database links

Mature mdm-miR394b

Accession MIMAT0025979
Description Malus domestica mdm-miR394b mature miRNA
Sequence 71 - UUGGCAUUCUGUCCACCUCC - 90
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47