miRBase entry: mdm-MIR396g

Stem-loop mdm-MIR396g


Accession
MI0023099
Description
Malus domestica mdm-MIR396g precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
8 open access papers mention mdm-MIR396g
(37 sentences)

Sequence

gauccuccuugrgauuUUCCACGGCUUUCUUGAACUGugcagugugcagaagaguuaaacuggcagaaauuuuucaugcaguuacauaaacaguucaagaaagcugugaaaaaccacaggcaggauu
((((((.((((.(.((((.(((((((((((((((((((...(((((((((((((((...........)))))))).))))..)))....))))))))))))))))))).)))).).)))).))))))

Structure
      c    r a    C                   -gca   --    -        aaac 
gauccu cuug g uuUU CACGGCUUUCUUGAACUGu    gug  ugca gaagaguu    u
|||||| |||| | |||| |||||||||||||||||||    |||  |||| ||||||||    g
uuagga ggac c aaaa gugucgaaagaacuugaca    cau  acgu cuuuuuaa    g
      c    a c    a                   aaua   ug    a        agac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature mdm-miR396g

Accession MIMAT0025995
Description Malus domestica mdm-miR396g mature miRNA
Sequence 17 - UUCCACGGCUUUCUUGAACUG - 37
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47