miRBase entry: mdm-MIR398b

Stem-loop mdm-MIR398b


Accession
MI0023103
Description
Malus domestica mdm-MIR398b precursor miRNA
Gene family
MIPF0000107; MIR398

Literature search
5 open access papers mention mdm-MIR398b
(36 sentences)

Sequence

gguagagggguuccacaggagugaccugagaucacauguagcauuuauguauugcgcuugaUGUGUUCUCAGGUCGCCCCUGcgguaccuucucuacc
(((((((((((.((.((((.(((((((((((.(((((..(((.............)))..))))).))))))))))).)))).)).))).))))))))

Structure
        -   u  a    a           u     gu   auuua 
gguagagg ggu cc cagg gugaccugaga cacau  agc     u
|||||||| ||| || |||| ||||||||||| |||||  |||     g
ccaucucu cca gg GUCC CGCUGGACUCU GUGUa  ucg     u
        u   u  c    C           U     gu   cguua 


Annotation confidence Not enough data
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Genome context
MDC014136.296: 3441-3538 [-]

Database links

Mature mdm-miR398b

Accession MIMAT0025999
Description Malus domestica mdm-miR398b mature miRNA
Sequence 62 - UGUGUUCUCAGGUCGCCCCUG - 82
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47