miRBase entry: mdm-MIR399a

Stem-loop mdm-MIR399a


Accession
MI0023105
Description
Malus domestica mdm-MIR399a precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
7 open access papers mention mdm-MIR399a
(9 sentences)

Sequence

ugaauaacagugcaauucuccuuuggcagaagucauucuggugcauauacucuugaguacuaucgcuggaugcauauauaugcuuucUGCCAAAGGAGAAUUGCCCUGcaauuca
(((((..(((.(((((((((((((((((((((....(((((((.(((((((....)))).)))))))))).((((....))))))))))))))))))))))))).)))..)))))

Structure
     aa   u                     ---------ucau       c   -    c 
ugaau  cag gcaauucuccuuuggcagaag             ucuggug aua uacu u
|||||  ||| |||||||||||||||||||||             ||||||| ||| ||||  
acuua  GUC CGUUAAGAGGAAACCGUcuuu             aggucgc uau auga u
     ac   C                     cguauauauacgu       -   c    g 


Annotation confidence Not enough data
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Genome context
MDC012194.254: 2496-2610 [+]

Database links

Mature mdm-miR399a

Accession MIMAT0026001
Description Malus domestica mdm-miR399a mature miRNA
Sequence 88 - UGCCAAAGGAGAAUUGCCCUG - 108
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47