miRBase entry: mdm-MIR399d

Stem-loop mdm-MIR399d


Accession
MI0023108
Description
Malus domestica mdm-MIR399d precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
7 open access papers mention mdm-MIR399d
(10 sentences)

Sequence

ugagcgaauuaguuguagggcuucucuccgauggcaggaaauauuaauggucaugaaucauggaagcauggauuuuuguguucucucaugaguuaugaccUGCCAAAGGAGAGUUGCCCUAcgacugcuuuugcuua
((((((((.((((((((((((..((((((..(((((............((((((((.((((((((((((((....))))))).)).))))).)))))))))))))..))))))..))))))))))))..))))))))

Structure
        -u            uu      ga     ggaaauauuaau        a     -  -       a 
ugagcgaa  uaguuguagggc  cucucc  uggca            ggucauga ucaug ga agcaugg u
||||||||  ||||||||||||  ||||||  |||||            |||||||| ||||| || |||||||  
auucguuu  gucagcAUCCCG  GAGAGG  ACCGU            ccaguauu aguac cu uuguguu u
        uc            UU      AA     ------------        g     u  c       u 


Annotation confidence Not enough data
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Genome context
MDC001546.348: 8228-8364 [-]

Database links

Mature mdm-miR399d

Accession MIMAT0026004
Description Malus domestica mdm-miR399d mature miRNA
Sequence 101 - UGCCAAAGGAGAGUUGCCCUA - 121
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47