miRBase entry: mdm-MIR477b

Stem-loop mdm-MIR477b


Accession
MI0023124
Description
Malus domestica mdm-MIR477b precursor miRNA
Gene family
MIPF0000216; MIR477

Literature search
2 open access papers mention mdm-MIR477b
(4 sentences)

Sequence

caaggcauuuuuguugcucACUCUCCCUCAAGGGCUUCGACcaaugucagacaugrcgagcucgaagacuuggggagagugaauaaaaagugucuug
((((((((((((.....((((((((((.((((..((((((.(..((.((....)).)).).)))))).))))))))))))))...))))))))))))

Structure
            guugc          U    GG      C aa  u  g 
caaggcauuuuu     ucACUCUCCC CAAG  CUUCGA c  ug ca a
||||||||||||     |||||||||| ||||  |||||| |  || ||  
guucugugaaaa     agugagaggg guuc  gaagcu g  gc gu c
            --aua          -    -a      c -a  r  a 


Annotation confidence Not enough data
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Genome context
MDC024949.20: 9572-9668 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mdm-MIR477b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdm-miR477b

Accession MIMAT0026020
Description Malus domestica mdm-miR477b mature miRNA
Sequence 20 - ACUCUCCCUCAAGGGCUUCGAC - 41
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47