miRBase entry: mdm-MIR535c

Stem-loop mdm-MIR535c


Accession
MI0023130
Description
Malus domestica mdm-MIR535c precursor miRNA
Gene family
MIPF0000136; MIR535

Literature search
5 open access papers mention mdm-MIR535c
(11 sentences)

Sequence

ugUGACAAGGAGAGAGAGCACGCuugucaucacccaugaacggaucaugguuguuuacaggugugcucucucuucuugucaua
(((((((((((((((((((((((((((...((.((((((.....)))))).))...)))))))))))))))))))))))))))

Structure
                           cau  c      a 
ugUGACAAGGAGAGAGAGCACGCuugu   ca ccauga c
|||||||||||||||||||||||||||   || |||||| g
auacuguucuucucucucguguggaca   gu gguacu g
                           uuu  u      a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
MDC011978.180: 7817-7899 [-]

Database links

Mature mdm-miR535c

Accession MIMAT0026026
Description Malus domestica mdm-miR535c mature miRNA
Sequence 3 - UGACAAGGAGAGAGAGCACGC - 23
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47