miRBase entry: mdm-MIR408b

Stem-loop mdm-MIR408b


Accession
MI0023135
Description
Malus domestica mdm-MIR408b precursor miRNA
Gene family
MIPF0000102; MIR408

Literature search
4 open access papers mention mdm-MIR408b
(15 sentences)

Sequence

ACAGGGAAGAGGUAGAGCAUGgauggaguucucaagagcaaaauagagcucuugugacucuacucaugcacugccucuucccugg
.((((((((((((((.((((((.(((((((..(((((((........))))))).))))))).)))))).)))))))))))))).

Structure
A              A      a       cu       aaa 
 CAGGGAAGAGGUAG GCAUGg uggaguu  caagagc   a
 |||||||||||||| |||||| |||||||  |||||||    
 gucccuucuccguc cguacu aucucag  guucucg   u
g              a      c       -u       aga 


Annotation confidence Not enough data
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Genome context
MDC006859.349: 17335-17419 [-]

Database links

Mature mdm-miR408b

Accession MIMAT0026031
Description Malus domestica mdm-miR408b mature miRNA
Sequence 1 - ACAGGGAAGAGGUAGAGCAUG - 21
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47