miRBase entry: mdm-MIR5225c

Stem-loop mdm-MIR5225c


Accession
MI0023156
Description
Malus domestica mdm-MIR5225c precursor miRNA
Gene family
MIPF0001388; MIR5225

Literature search
5 open access papers mention mdm-MIR5225c
(11 sentences)

Sequence

ucgaaauaucaaaucgucgggacuUCUGUCGUGGGUGAGAUGGUGCcgaugccacguaauucggggcagcgagcuucaucucuccucgacagaagccucuaaugcuuugauucuacaga
.......((((((.(((.(((.(((((((((.(((.(((((((.((((.((((.((.....)).)))).)).)).))))))).)))))))))))))))...))).))))))........

Structure
-ucgaaau      u   --c   a         U   U       U  -  a    a  u 
        aucaaa cgu   ggg cuUCUGUCG GGG GAGAUGG GC cg ugcc cg a
        |||||| |||   ||| ||||||||| ||| ||||||| || || |||| || a
        uaguuu gua   ucc gaagacagc ucc cucuacu cg gc acgg gc u
agacaucu      c   auc   -         -   u       u  a  g    g  u 


Annotation confidence Not enough data
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Genome context
MDC011178.406: 16627-16745 [-]

Database links

Mature mdm-miR5225c

Accession MIMAT0026052
Description Malus domestica mdm-miR5225c mature miRNA
Sequence 25 - UCUGUCGUGGGUGAGAUGGUGC - 46
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47