miRBase entry: mdm-MIR5225b

Stem-loop mdm-MIR5225b


Accession
MI0023161
Description
Malus domestica mdm-MIR5225b precursor miRNA
Gene family
MIPF0001388; MIR5225

Literature search
4 open access papers mention mdm-MIR5225b
(9 sentences)

Sequence

aucaaagcguagggacuUCUGUCGAAGGUGAGAUGGUGCcgaaggccauguauauugguagcugcgauuacaagcuuuauauagcuagucaauucaggccagcgagcuucaucccuccucgacugaagccucucacgcuuugau
((((((((((((((.((((.(((((.((.(.(((((.((((..((((.((...((((((((((((........)).......))))).))))).))))))..)).)).))))).).))))))).)))).)))).))))))))))

Structure
          -    a    U     A  U A     U  -  aa    a  uau     -     -------  gau 
aucaaagcgu aggg cuUC GUCGA GG G GAUGG GC cg  ggcc ug   auugg uagcu       gc   u
|||||||||| |||| |||| ||||| || | ||||| || ||  |||| ||   ||||| |||||       ||    
uaguuucgca ucuc gaag cagcu cc c cuacu cg gc  ccgg ac   uaacu aucga       cg   a
          c    c    u     -  u c     u  a  ga    -  --u     g     uauauuu  aac 


Annotation confidence Not enough data
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Genome context
MDC003092.253: 6584-6727 [+]

Database links

Mature mdm-miR5225b

Accession MIMAT0026057
Description Malus domestica mdm-miR5225b mature miRNA
Sequence 18 - UCUGUCGAAGGUGAGAUGGUGC - 39
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47