miRBase entry: mdm-MIR393e

Stem-loop mdm-MIR393e


Accession
MI0023166
Description
Malus domestica mdm-MIR393e precursor miRNA
Gene family
MIPF0000083; MIR393

Literature search
6 open access papers mention mdm-MIR393e
(31 sentences)

Sequence

gguggaggcuuccaaagggaucgcauugaucuaauugaucagauaugucaaacaucauccgcauagacauaugguggguuauguuuucgucuguguagucggAUCAUGCGAUCCCUUCGGACGuuuccauc
(((((((((.(((.((((((((((((.(((((.((((..(((((.....((((((.(((((((((....))).)))))).))))))..)))))..)))).))))))))))))))))).))).)))))))))

Structure
         u   a            u     a    au     auguc      c      -   g 
gguggaggc ucc aagggaucgcau gaucu auug  cagau     aaacau auccgc aua a
||||||||| ||| |||||||||||| ||||| ||||  |||||     |||||| |||||| |||  
cuaccuuuG AGG UUCCCUAGCGUA CUAgg ugau  gucug     uuugua ugggug uau c
         C   C            -     c    gu     ---cu      u      g   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature mdm-miR393e

Accession MIMAT0026062
Description Malus domestica mdm-miR393e mature miRNA
Sequence 103 - AUCAUGCGAUCCCUUCGGACG - 123
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47