miRBase entry: mdm-MIR393f

Stem-loop mdm-MIR393f


Accession
MI0023167
Description
Malus domestica mdm-MIR393f precursor miRNA
Gene family
MIPF0000083; MIR393

Literature search
6 open access papers mention mdm-MIR393f
(31 sentences)

Sequence

guggaggcuuccaaagggaucgcauugaucuaauugaucauauaugucaaacaucguccguacagacauggcagguuauauauguaguuggAUCAUGCGAUCCCUUCGGACGuuuccau
((((((((.(((.((((((((((((.((((((((((..((((((((.....(((.(((......))))))......)))))))))))))))))))))))))))))).))).))))))))

Structure
        u   a            u          au        -ucaaa   c   cg 
guggaggc ucc aagggaucgcau gaucuaauug  cauauaug      cau guc  u
|||||||| ||| |||||||||||| ||||||||||  ||||||||      ||| |||   
uaccuuuG AGG UUCCCUAGCGUA CUAgguugau  guauauau      gua cag  a
        C   C            -          --        uggacg   -   ac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature mdm-miR393f

Accession MIMAT0026063
Description Malus domestica mdm-miR393f mature miRNA
Sequence 92 - AUCAUGCGAUCCCUUCGGACG - 112
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47