miRBase entry: cme-MIR845

Stem-loop cme-MIR845


Accession
MI0023188
Description
Cucumis melo cme-MIR845 precursor miRNA


Sequence

ugcuuaucacuuugcguacucagacgaucuaaauucuucaucagcauuuguugcuguuguuguuuuucugcuugaauacucaaucgcucuauguuuuucacuaucgaagauaugguagcuucugcaaauccacuuucaucucagaaacuuucuguuauagugcuucaaaucuuucuucgugcuucuucgccaucuucuucugcuuuaccaggauuuUCGCUCUGAUACCAAUAUGAUGgaacccgg
...((((((..(((.(((.((((((((...(((..(..((.(((((.....))))).))..)..)))....((((....))))..(((((((((((((.......)))))))))).)))...........((((...((..(((((...)))))..))))))................(.((......)))......(((((......)))))...))).)))))))))))..)))))).......

Structure
----ugc      cu   c   c     -   ---------------------------------------ucuaaauucuucaucagcauuuguugcuguuguuguuuuucugcuugaauacucaauc   -          ca 
       uuauca  uug gua ucaga cga                                                                                                 gcu cuauguuuuu  c
       ||||||  ||| ||| ||||| |||                                                                                                 ||| ||||||||||  u
       gGUAGU  AAC CAU AGUCU GCU                                                                                                 cga gguauagaag  a
ggcccaa      AU   -   -     C   uuuaggaccauuucgucuucuucuaccgcuucuucgugcuucuuucuaaacuucgugauauugucuuucaaagacucuacuuucaccuaaacgucuu   u          cu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cme-miR845

Accession MIMAT0026084
Description Cucumis melo cme-miR845 mature miRNA
Sequence 217 - UCGCUCUGAUACCAAUAUGAUG - 238
Evidence not_experimental

References

  1. PubMed ID: 22753475
    The genome of melon (Cucumis melo L.)
    "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
    "Proc Natl Acad Sci U S A (2012) 109:11872-11877