Stem-loop cme-MIR172f

Accession

MI0023203

Description

Cucumis melo cme-MIR172f precursor miRNA

Gene family

MIPF0000035; MIR172

Sequence

gcuaaugcagcaucaucaagauucucaaucaaaaucaucuuccaaacaaaucaaucccacaaaaacaaaauuuuaaaaaacaaauaauuaggguuuccuuucuuuuuucuuuauuuauuucuuauuuuguugUGAAUCUUGAUGAUGCCGCACaagcaaauua
(((..(((.(((((((((((((((.(((.((((((.........................((((......)))).......((((((.(((((...............))))).))))))...))))))))).))))))))))))))).)))..)))......

Structure

------   aa   a               u   u      caucuuccaaacaaaucaaucccacaaaaacaaaauuuuaaaaaac      u     uuuccu 
      gcu  ugc gcaucaucaagauuc caa caaaau                                              aaauaa uaggg      u
      |||  ||| ||||||||||||||| ||| ||||||                                              |||||| |||||      u
      cga  ACG CGUAGUAGUUCUAAG guu guuuua                                              uuuauu auuuc      c
auuaaa   aC   C               U   -      -------------------------------------------uuc      u     uuuuuu 

Annotation confidence Not enough data

Genome context

Unknown

Mature cme-miR172f

• Accession: MIMAT0026099
• Description: Cucumis melo cme-miR172f mature miRNA
• Sequence: 133 - UGAAUCUUGAUGAUGCCGCAC - 153
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877