Stem-loop cme-MIR1863

Accession

MI0023205

Description

Cucumis melo cme-MIR1863 precursor miRNA

Sequence

gaaucgaaucugaacaaagggaguucggggcgugguggguuacagacaacguggguuuggggcgugguauugugacggacaugcguuuuuuggguauuuggccgucagguugcuaggguguugaacgacggacggcgaacgguuuuagggacgacaaacugaugaguuuuaugggguuuugugggguuggaauggcagaucugaaagcguggguuucggguuggggacaugaguugaaggguuugcagcggacauggaaggagaaaggggcagcgacgguggcugugggagaaagguggaugcggcggcgacggugacuguggagaaaaaggggcagcggcgggucuaagguuggagggagcgacggcugaugcgugaagcuucgacaggcgugcguggguuucuguauugcaagagacaugauuuucagaugaggaguggggguuggggacaaggguuuuuuuguuuuuuaaguggagacaaaaggugaaagugagagauuuacacuugaguaugucuccgucuaugcuaguuauugacgaagguagagaucgaacaaagcggcuaaaaucuaaAGCUCUGAUACCAUGUUAGAUUUGuaugaa
..((((..(((((((.......)))))))...))))....((((((((((((((..(((((((..........((((......)))).(((((((.(((((((((...((((((..(.((((........)))).)...............(.(((((((.((((...)))).))..))))).).(((.(....((((((((...(((....(((((......)))))....)))...))))))))..).)))................((((..((.((.(((((.(.(..........).).))))).)).))..))))...........)))))).(((.(((...(((((..(....)..)))))))).)))..(.(((((.(((((..((((((((((((........))))))..((((((((.........))))))))((((((((((....)))))))))).....(((((((..(((((.((((.....)))).))))).....)))))))..))))))..))..))).))))).)..............)))))))))))))))))))))))..))))))).).))))))....

Structure

gaaucgaaucugaacaaagggaguucggggcguggugggu      - -       gu       gugguauugugacggacaugcguuu       a         ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------cag      --------aggguguugaacgacggacggcgaacgguuuuagggacgacaaacugaugaguuuuaugggguuuuguggg   g aaug        gaa   gugg     gg 
                                        uacaga c aacgugg  uuggggc                         uuugggu uuuggccgu                                                                                                                                                                                                                              guugcu                                                                               guu g    gcagaucu   agc    guuuc  g
                                        |||||| | |||||||  |||||||                         ||||||| |||||||||                                                                                                                                                                                                                              ||||||                                                                               ||| |    ||||||||   |||    |||||   
                                        auGUUU G UUGUACC  AGUCUCG                         Aaaucua aaaucggcg                                                                                                                                                                                                                              cgacgg                                                                               cag c    cguuuggg   uug    caggg  u
------------------------------------aagu      A A       AU       -------------------------       -         aaacaagcuagagauggaagcaguuauugaucguaucugccucuguaugaguucacauuuagagagugaaaguggaaaacagaggugaauuuuuuguuuuuuugggaacagggguugggggugaggaguagacuuuuaguacagagaacguuaugucuuugggugcgugcggacagcuucgaagugcguagucggcagcgagggagguuggaaucugggcgg      ggaaaaagaggugucaguggcagcggcggcguagguggaaagagggugucgguggcagcgacggggaaagaggaaggua   g --ga        aag   agua     gu 

Annotation confidence Not enough data

Genome context

Unknown

Mature cme-miR1863

• Accession: MIMAT0026101
• Description: Cucumis melo cme-miR1863 mature miRNA
• Sequence: 576 - AGCUCUGAUACCAUGUUAGAUUUG - 599
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877