Stem-loop cme-MIR169h

Accession

MI0023218

Description

Cucumis melo cme-MIR169h precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

1 open access papers mention cme-MIR169h
(1 sentences)

Sequence

ucaagugauuCAGCCAAGGAUGACUUGCCGGcaaaaccauuuaacucuuuuuuucuaauuucaauuuuuuuuuuacuucucuauucucgaguucagucgauuaaaauucgaacuucaaacaucuauugaagauauauaauaauuuaacuaauugaauuacauuaagaauagucaacaaguuguacuaaaaaaaauuaaucgaggaaauguauguauauaguaauguuuuuuugaacuuuuauuuuguuuacuuuuggucggcaaggcgucuuuggcuauauaacuucc
..((((.((..(((((((((((.(((((((((..................((((((...((.((((((((((.(((..(((((((((((((((...........))))))).((((((.......))))))........((((((((....))))))))......))))))......))..)))..))))))))))))...)))))).(((...(((.(((((.((((....))))..))))).))).))).....))))))))).)))))))))))..)).))))..

Structure

uc    g  uC           A         -------------------------------aaaaccauuuaacucuuu      aau  c          -u   uu  ------      ucgaguucagucgauuaaaauucgaacuucaaacaucu 
  aagu au  AGCCAAGGAUG CUUGCCGGc                                                 uuuucu   uu aauuuuuuuu  uac  cu      cuauuc                                      a
  |||| ||  ||||||||||| |||||||||                                                 ||||||   || ||||||||||  |||  ||      ||||||                                      u
  uuca ua  ucgguuucugc gaacggcug                                                 aaagga   aa uuaaaaaaaa  aug  ga      gauaag                                      u
cc    a  ua           g         guuuucauuuguuuuauuuucaaguuuuuuuguaaugauauauguaugu      gcu  -          uc   uu  acaacu      aauuacauuaaguuaaucaauuuaauaauauauagaag 

Annotation confidence Not enough data

Genome context

Unknown

Mature cme-miR169h

• Accession: MIMAT0026114
• Description: Cucumis melo cme-miR169h mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCGG - 31
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877