miRBase entry: cme-MIR171b

Stem-loop cme-MIR171b


Accession
MI0023227
Description
Cucumis melo cme-MIR171b precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
1 open access papers mention cme-MIR171b
(1 sentences)

Sequence

uuaacgggauauuggugcgguucaauaaaaagguaauacucaaaauaagcguuggguuuugcuuuuugaUUGAGCCGUGCCAAUAUCACGugucaacga
...(((.(((((((((((((((((((.(((((((((.((((((........)))))).))))))))).))))))))))))))))))).)))........

Structure
-----uua   g                   a         u      aau 
        acg gauauuggugcgguucaau aaaagguaa acucaa   a
        ||| ||||||||||||||||||| ||||||||| ||||||    
        uGC CUAUAACCGUGCCGAGUUa uuuuucguu uggguu   a
agcaacug   A                   g         u      gcg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cme-miR171b

Accession MIMAT0026123
Description Cucumis melo cme-miR171b mature miRNA
Sequence 70 - UUGAGCCGUGCCAAUAUCACG - 90
Evidence not_experimental

References

  1. PubMed ID: 22753475
    The genome of melon (Cucumis melo L.)
    "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
    "Proc Natl Acad Sci U S A (2012) 109:11872-11877