Stem-loop cme-MIR319c

Accession

MI0023234

Description

Cucumis melo cme-MIR319c precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

2 open access papers mention cme-MIR319c
(3 sentences)

Sequence

gagagagagcuuccuucaguccacucauagagggauucaaagggguugcugaaguaacugccgacucauucacucaaacacucaguagaacucaaaaagaaauuauccaagaaaaagaaaagaaaauuugguucaaaguauauucuuuuccucuauugugauugugugaaugaagcgggagauauuuugcacucucucuuauucuuugcUUGGACUGAAGGGAGCUCCUccuuuuuacuu
..(((.(((((((((((((((((......(((((((....(((((.(((.((((((.((.(((..((((((((.(((.(((..((((((..((.....))................((((((((.((((......))))...)))))))).))))))))).))).))))))))..))).)).))))))))).)))))...)))))))...))))))))))))))))))))..........

Structure

--------ga   a                 cucaua       ucaa     u   u      a  g   ac        u   a   uc      acucaaaaagaaauuauccaagaaaaa        --a    gg 
          gag gagcuuccuucagucca      gagggau    agggg ugc gaagua cu ccg  ucauucac caa cac  aguaga                           gaaaagaa   auuu  u
          ||| |||||||||||||||||      |||||||    ||||| ||| |||||| || |||  |||||||| ||| |||  ||||||                           ||||||||   ||||   
          cUC CUCGAGGGAAGUCAGGU      uuucuua    ucucu acg uuuuau ga ggc  aguaagug guu gug  uuaucu                           cuuuucuu   ugaa  u
uucauuuuuc   -                 ---Ucg       -uuc     c   -      a  g   ga        u   a   --      --------------------------c        aua    ac 

Annotation confidence Not enough data

Genome context

Unknown

Mature cme-miR319c

• Accession: MIMAT0026130
• Description: Cucumis melo cme-miR319c mature miRNA
• Sequence: 210 - UUGGACUGAAGGGAGCUCCU - 229
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877