miRBase entry: cme-MIR393b

Stem-loop cme-MIR393b


Accession
MI0023241
Description
Cucumis melo cme-MIR393b precursor miRNA
Gene family
MIPF0000083; MIR393


Sequence

caggaagcaUCCAAAGGGAUCGCAUUGAUCccacuuuguagcaauuuuuucuguuucuuuuucuuuuuuuuuaccuuuucauguuuucuuuuuuacccucuucugcuauggaauuuggaucaugccaucucuuuggauuccuccugc
(((((.(.((((((((((((.((((.(((((...(((((((((............................................................)))))))))....))))))))).)))))))))))).).))))).

Structure
-     a c            C    U     -cac         auuuuuucuguuucuuuuucuuuuuuuuu 
 cagga g aUCCAAAGGGAU GCAU GAUCc    uuuguagca                             a
 ||||| | |||||||||||| |||| |||||    |||||||||                              
 guccu c uagguuucucua cgua cuagg    agguaucgu                             c
c     c u            c    -     uuua         cuucucccauuuuuucuuuuguacuuuuc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cme-miR393b

Accession MIMAT0026137
Description Cucumis melo cme-miR393b mature miRNA
Sequence 10 - UCCAAAGGGAUCGCAUUGAUC - 30
Evidence not_experimental

References

  1. PubMed ID: 22753475
    The genome of melon (Cucumis melo L.)
    "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
    "Proc Natl Acad Sci U S A (2012) 109:11872-11877