Stem-loop cme-MIR394a

Accession

MI0023244

Description

Cucumis melo cme-MIR394a precursor miRNA

Gene family

MIPF0000100; MIR394

Sequence

aacagaauuuaUUGGCAUUCUGUCCACCUCCuccacauauuaauuuauauuuauauuauauauauacuuuaauuucuguguguuuaucguuauaauuaauuauaaauuaaauugauucauuuguuugguuuggaggugggcauacugccaauugaguucuc
...((((((((((((((...(((((((((((.(((.(((((((((((((.(((.((((((.((((((..........)))))).......))))))))).))))))))))...........))).)))...)))))))))))...)))))).)))))))).

Structure

aac        -      UUC           --u   c   -----------          u   u      ------u      uuua 
   agaauuua UUGGCA   UGUCCACCUCC   cca aua           uuaauuuaua uua auuaua       auauac    a
   |||||||| ||||||   |||||||||||   ||| |||           |||||||||| ||| ||||||       ||||||     
   ucuugagu aaccgu   acggguggagg   ggu ugu           aauuaaauau aau uaauau       ugugug    u
--c        u      cau           uuu   u   uuacuuaguua          u   -      ugcuauu      ucuu 

Annotation confidence Not enough data

Genome context

Unknown

Mature cme-miR394a

• Accession: MIMAT0026140
• Description: Cucumis melo cme-miR394a mature miRNA
• Sequence: 12 - UUGGCAUUCUGUCCACCUCC - 31
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877