miRBase entry: cme-MIR2111b

Stem-loop cme-MIR2111b


Accession
MI0023273
Description
Cucumis melo cme-MIR2111b precursor miRNA
Gene family
MIPF0000754; MIR2111


Sequence

uaggaucuggUAAUCUGCAUCCUGAGGUUUAgggaguucaaaauauuaaugauggguggguuugagggugcaaagccaauaacaaaaaagauaacaaauuauuggccaaagcucuugauuuugauucauuuugagcuauuuugccuacauauuccccugauuauguguuucucuaguccuugggaugcagauuaucucuuccug
(((((...(((((((((((((((((((.(((((((......(((((..(((((.((.(((..((.(((.(((((((((((((................))))))))...(((((..(((........)))..)))))..))))))).).))..))))).))))))))))))))))).)))))))))))))))))))...)))))

Structure
     ucu                   U       guucaa     ua     g  u   uu  a -  u     ---------------------------------        caaaaaa 
uagga   ggUAAUCUGCAUCCUGAGG UUAggga      aauau  augau gg ggg  ug g gg gcaaa                                 gccaauaa       g
|||||   ||||||||||||||||||| |||||||      |||||  ||||| || |||  || | || |||||                                 ||||||||        
guccu   cuauuagacguaggguucc gaucucu      uugug  uauua uc ccc  au c uc cguuu                                 cgguuauu       a
     ucu                   u       ------     --     g  -   uu  a a  -     uaucgaguuuuacuuaguuuuaguucucgaaac        aaacaau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cme-miR2111b

Accession MIMAT0026169
Description Cucumis melo cme-miR2111b mature miRNA
Sequence 11 - UAAUCUGCAUCCUGAGGUUUA - 31
Evidence not_experimental

References

  1. PubMed ID: 22753475
    The genome of melon (Cucumis melo L.)
    "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
    "Proc Natl Acad Sci U S A (2012) 109:11872-11877