miRBase entry: cme-MIR398a

Stem-loop cme-MIR398a


Accession
MI0023278
Description
Cucumis melo cme-MIR398a precursor miRNA
Gene family
MIPF0000107; MIR398


Sequence

ccuacauggucguccugagaauacaugucacuguauugucugaauaacauucagcaaguaacauucaacaUGUGUUCUCAGGUCGCCCCUGcaggcuuuu
(((.((.((.((.(((((((((((((((...(((.(((.((((((...)))))))))...)))....))))))))))))))).)).)).)).))).....

Structure
-----   a  u  u  u               -cac   --a   u      a 
     ccu ca gg cg ccugagaauacaugu    ugu   uug cugaau  
     ||| || || || |||||||||||||||    |||   ||| |||||| a
     gga GU CC GC GGACUCUUGUGUaca    aca   aac gacuua  
uuuuc   c  C  C  U               acuu   aug   -      c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cme-miR398a

Accession MIMAT0026174
Description Cucumis melo cme-miR398a mature miRNA
Sequence 71 - UGUGUUCUCAGGUCGCCCCUG - 91
Evidence not_experimental

References

  1. PubMed ID: 22753475
    The genome of melon (Cucumis melo L.)
    "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
    "Proc Natl Acad Sci U S A (2012) 109:11872-11877