miRBase entry: cme-MIR166e

Stem-loop cme-MIR166e


Accession
MI0023283
Description
Cucumis melo cme-MIR166e precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
1 open access papers mention cme-MIR166e
(5 sentences)

Sequence

guguuuggaauggaguuugcuccgaaaucuuuuuuuugucaauccuuuugaaaggagaagaaauaaaacuacaugucaaugucuuuuccugucauuuuuucuuaaguuuucuuucuugcuuucuucuuuaugaucuucaaaauuuuuauucuauguuguuuuuuucccugacuaaaaguagucuuuuucuucuucuuccucuuauuugaaaguuuguucguguugaauaaauggaaaaaaugaucUCGGACCAGGCUUCAUUCCUCacacguaccu
((((..(((((((((((((.(((((.(((.(((((((.((((.....))))((((((((((((.(((((.(((((..((((..((((...(((((........((((..........))))........)))))....))))....)))).))))).))))).......(((((....)))))..))))))))))))..((......))..((((((((.....)))))))).))))))).))).))))).)))))))))))))..))))......

Structure
------    uu             c     a   u       ----------------------gucaauccuuuuga            ----------------------u     u     uc    --uc    -ccu     uuuuucuu    uuuc 
      gugu  ggaauggaguuug uccga auc uuuuuuu                                    aaggagaagaaa                       aaaac acaug  aaug    uuuu    gucau        aagu    u
      ||||  ||||||||||||| ||||| ||| |||||||                                    ||||||||||||                       ||||| |||||  ||||    ||||    |||||        ||||     
      caca  CCUUACUUCGGAC AGGCU uag aaaaaag                                    uucuucuucuuu                       uuuug uguau  uuau    aaaa    uagua        uucg    u
uccaug    CU             C     c   u       guaaauaaguugugcuuguuugaaaguuuauucucc            uucugaugaaaaucagucccuuu     u     -c    uuuu    cuuc     uuucuucu    uucu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cme-miR166e

Accession MIMAT0026179
Description Cucumis melo cme-miR166e mature miRNA
Sequence 246 - UCGGACCAGGCUUCAUUCCUC - 266
Evidence not_experimental

References

  1. PubMed ID: 22753475
    The genome of melon (Cucumis melo L.)
    "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
    "Proc Natl Acad Sci U S A (2012) 109:11872-11877