Stem-loop cme-MIR172a

Accession

MI0023285

Description

Cucumis melo cme-MIR172a precursor miRNA

Gene family

MIPF0000035; MIR172

Sequence

uccgacggagcaucaucaagauucacaugaaauuucauucgacuucgccggagauugaagaaauuuuaaaaaauauaaaaaguuaaaaaaagaaucagcagucggccucgugggagauauugaucuaauuuccaauugacaugGGAAUCUUGAUGAUGCUGCAGcggcaaucaa
.(((..(.((((((((((((((((.(((((((((((.(((((((((...)))).))))))))))))........................(((.((((..(((..((....))..))).))))))).............)))).)))))))))))))))).)..))).......

Structure

------u   ac g                a    -------------------------------------------------------------------------       a     -    g 
       ccg  g agcaucaucaagauuc caug                                                                         aaauuuc uucga cuuc  
       |||  | |||||||||||||||| ||||                                                                         ||||||| ||||| |||| c
       ggc  C UCGUAGUAGUUCUAAG guac                                                                         uuuaaag aaguu gagg  
aacuaac   GA G                G    aguuaaccuuuaaucuaguuauagagggugcuccggcugacgacuaagaaaaaaauugaaaaauauaaaaaau       -     a    c 

Annotation confidence Not enough data

Genome context

Unknown

Mature cme-miR172a

• Accession: MIMAT0026181
• Description: Cucumis melo cme-miR172a mature miRNA
• Sequence: 144 - GGAAUCUUGAUGAUGCUGCAG - 164
• Evidence: not_experimental

References

1. PubMed ID: 22753475
   The genome of melon (Cucumis melo L.)
   "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
   "Proc Natl Acad Sci U S A (2012) 109:11872-11877