miRBase entry: ccr-mir-135c

Stem-loop ccr-mir-135c


Accession
MI0023322
Description
Cyprinus carpio ccr-mir-135c precursor miRNA
Gene family
MIPF0000028; mir-135

Literature search
1 open access papers mention ccr-mir-135c
(3 sentences)

Sequence

cuuggucacugcuguguuuUAUGGCUUUCUAUUCCUAUGUGAuuuucuucugucaugucacauaggguucaaagccauuggguacagaguggaag
.....(((((.((((((((.((((((((....(((((((((((...(....)....)))))))))))...)))))))).)))))))))))))...

Structure
cuugg     g        U        CUAU           -uuu u 
     ucacu cuguguuu AUGGCUUU    UCCUAUGUGAu    c u
     ||||| |||||||| ||||||||    |||||||||||    |  
     gguga gacauggg uaccgaaa    gggauacacug    g c
--gaa     -        u        -cuu           uacu u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ccr-miR-135c

Accession MIMAT0026216
Description Cyprinus carpio ccr-miR-135c mature miRNA
Sequence 20 - UAUGGCUUUCUAUUCCUAUGUGA - 42
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22303472
    Identification and profiling of microRNAs from skeletal muscle of the common carp
    Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
    PLoS One (2012) 7:e30925