miRBase entry: ccr-mir-142-1

Stem-loop ccr-mir-142-1


Accession
MI0023327
Description
Cyprinus carpio ccr-mir-142-1 precursor miRNA
Gene family
MIPF0000084; mir-142

Literature search
1 open access papers mention ccr-mir-142-1
(1 sentences)

Sequence

gcgggaacaucagugcagucacuCAUAAAGUAGACAGCACUACUaaaggucucuacacaguGUAGUGUUUCCUACUUUAUGGaugaguguacuguuugcugc
((((.((...(((((((.(((.(((((((((((..((((((((.....((....)).....))))))))..))))))))))).))).))))))).)).))))

Structure
    g  cau       g   c           AC        Uaaag  c 
gcgg aa   cagugca uca uCAUAAAGUAG  AGCACUAC     gu u
|||| ||   ||||||| ||| |||||||||||  ||||||||     ||  
cguc uu   gucaugu agu GGUAUUUCAUC  UUGUGAUG     ca c
    g  --u       g   a           CU        ugaca  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ccr-miR-142-5p

Accession MIMAT0026222
Description Cyprinus carpio ccr-miR-142-5p mature miRNA
Sequence 24 - CAUAAAGUAGACAGCACUACU - 44
Evidence experimental
Illumina [1]

Mature ccr-miR-142-3p

Accession MIMAT0026223
Description Cyprinus carpio ccr-miR-142-3p mature miRNA
Sequence 62 - GUAGUGUUUCCUACUUUAUGG - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22303472
    Identification and profiling of microRNAs from skeletal muscle of the common carp
    Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
    PLoS One (2012) 7:e30925