miRBase entry: ccr-mir-146a

Stem-loop ccr-mir-146a


Accession
MI0023331
Description
Cyprinus carpio ccr-mir-146a precursor miRNA
Gene family
MIPF0000103; mir-146

Literature search
4 open access papers mention ccr-mir-146a
(8 sentences)

Sequence

agcacuuaagcccUGAGAACUGAAUUCCAUAGAUGGuguucauaaagaguucaucuaugggcucaguucuucuggcauugugu
.((((....(((..(((((((((..(((((((((((..(((.....))).))))))))))).)))))))))..)))...))))

Structure
a    uuaa   cU         AU           ug   a 
 gcac    gcc  GAGAACUGA  UCCAUAGAUGG  uuc u
 ||||    |||  |||||||||  |||||||||||  ||| a
 ugug    cgg  uucuugacu  ggguaucuacu  gag a
-    -uua   uc         -c           -u   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ccr-miR-146a

Accession MIMAT0026226
Description Cyprinus carpio ccr-miR-146a mature miRNA
Sequence 14 - UGAGAACUGAAUUCCAUAGAUGG - 36
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22303472
    Identification and profiling of microRNAs from skeletal muscle of the common carp
    Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
    PLoS One (2012) 7:e30925